NOISeq

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see NOISeq.

Exploratory analysis and differential expression for RNA-seq data

Bioconductor version: 3.20

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

Author: Sonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa

Maintainer: Sonia Tarazona <sotacam at eio.upv.es>

Citation (from within R, enter citation("NOISeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("NOISeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NOISeq")

NOISeq User's Guide PDF R Script

QCreport.pdf PDF

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization

Version 2.50.0

In Bioconductor since BioC 2.11 (R-2.15) (12.5 years)

License Artistic-2.0

Depends R (>= 2.13.0), methods, Biobase(>= 2.13.11), splines (>= 3.0.1), Matrix (>= 1.2)

Imports

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me metaSeq

Imports Me benchdamic, broadSeq, CNVPanelizer, ExpHunterSuite

Suggests Me compcodeR, GeoTcgaData

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NOISeq_2.50.0.tar.gz

Windows Binary (x86_64) NOISeq_2.50.0.zip

macOS Binary (x86_64) NOISeq_2.50.0.tgz

macOS Binary (arm64) NOISeq_2.50.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/NOISeq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NOISeq

Bioc Package Browser https://code.bioconductor.org/browse/NOISeq/

Package Short Url https://bioconductor.org/packages/NOISeq/

Package Downloads Report Download Stats