MinimumDistance

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see MinimumDistance.

A Package for De Novo CNV Detection in Case-Parent Trios

Bioconductor version: 3.20

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at jhu.edu>

Citation (from within R, enter citation("MinimumDistance")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MinimumDistance")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MinimumDistance")

Detection of de novo copy number alterations in case-parent trios PDF R Script

Reference Manual PDF

NEWS Text

Version 1.50.0

In Bioconductor since BioC 2.10 (R-2.15) (13 years)

License Artistic-2.0

Depends R (>= 3.5.0), VanillaICE(>= 1.47.1)

System Requirements

URL

Linking To

Enhances snow, doSNOW

Depends On Me

Imports Me

Suggests Me

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) MinimumDistance_1.50.0.zip

macOS Binary (x86_64) MinimumDistance_1.50.0.tgz

macOS Binary (arm64) MinimumDistance_1.50.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MinimumDistance

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MinimumDistance

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