MLInterfaces

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see MLInterfaces.

Uniform interfaces to R machine learning procedures for data in Bioconductor containers

Bioconductor version: 3.20

This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.

Author: Vincent Carey [cre, aut] ORCID iD ORCID: 0000-0003-4046-0063 , Jess Mar [aut], Jason Vertrees [ctb], Laurent Gatto [ctb], Phylis Atieno [ctb] (Translated vignettes from Sweave to Rmarkdown / HTML.)

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("MLInterfaces")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MLInterfaces")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLInterfaces")

A machine learning tutorial tutorial: applications of the Bioconductor MLInterfaces package to gene expression data HTML R Script

MLInterfaces 2.0 -- a new design HTML R Script

MLInterfaces Computer Cluster PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Clustering, Software

Version 1.86.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years)

License LGPL

Depends R (>= 3.5), Rcpp, methods, BiocGenerics(>= 0.13.11), Biobase, annotate, cluster

Imports gdata, pls, sfsmisc, MASS, rpart, genefilter, fpc, ggvis, shiny, gbm, RColorBrewer, hwriter, threejs (>= 0.2.2), mlbench, stats4, tools, grDevices, graphics, stats, magrittr, SummarizedExperiment

System Requirements

URL

Suggests class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party, klaR, BiocStyle, knitr, testthat

Linking To

Enhances parallel

Depends On Me pRoloc, SigCheck, dGAselID, nlcv

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MLInterfaces_1.86.0.tar.gz

Windows Binary (x86_64) MLInterfaces_1.86.0.zip (64-bit only)

macOS Binary (x86_64) MLInterfaces_1.86.0.tgz

macOS Binary (arm64) MLInterfaces_1.86.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MLInterfaces

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MLInterfaces

Bioc Package Browser https://code.bioconductor.org/browse/MLInterfaces/

Package Short Url https://bioconductor.org/packages/MLInterfaces/

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