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CGHcall
This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see CGHcall.
Calling aberrations for array CGH tumor profiles.
Bioconductor version: 3.20
Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
Author: Mark van de Wiel, Sjoerd Vosse
Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>
Citation (from within R, enter
citation("CGHcall")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CGHcall")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CGHcall") Reference Manual
PDF
Details
Version
2.68.0
In Bioconductor since
BioC 2.1 (R-2.6) (17.5 years)
License
GPL (http://www.gnu.org/copyleft/gpl.html)
Depends
R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
Imports
System Requirements
See More
Suggests
Linking To
Enhances
Depends On Me
CGHnormaliter, GeneBreak
Imports Me
CGHnormaliter, QDNAseq
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
CGHcall_2.68.0.tar.gz
Windows Binary (x86_64)
CGHcall_2.68.0.zip
macOS Binary (x86_64)
CGHcall_2.68.0.tgz
macOS Binary (arm64)
CGHcall_2.68.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/CGHcall
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/CGHcall
Bioc Package Browser
https://code.bioconductor.org/browse/CGHcall/
Package Short Url
https://bioconductor.org/packages/CGHcall/
Package Downloads Report
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