CBEA
This package is for version 3.20 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CBEA.
Competitive Balances for Taxonomic Enrichment Analysis in R
Bioconductor version: 3.20
This package implements CBEA, a method to perform set-based analysis for microbiome relative abundance data. This approach constructs a competitive balance between taxa within the set and remainder taxa per sample. More details can be found in the Nguyen et al. 2021+ manuscript. Additionally, this package adds support functions to help users perform taxa-set enrichment analyses using existing gene set analysis methods. In the future we hope to also provide curated knowledge driven taxa sets.
Author: Quang Nguyen [aut, cre] ORCID iD ORCID: 0000-0002-2072-3279
Maintainer: Quang Nguyen <quangpmnguyen at gmail.com>
citation("CBEA")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CBEA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CBEA")
Details
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Follow Installation instructions to use this package in your R session.