ArrayExpress

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: 3.20

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

ArrayExpress: Import and convert ArrayExpress data sets into R object PDF R Script

Reference Manual PDF

NEWS Text

Version 1.66.0

In Bioconductor since BioC 2.3 (R-2.8) (16.5 years)

License Artistic-2.0

Depends R (>= 2.9.0), Biobase(>= 2.4.0)

Imports oligo, limma, httr, utils, jsonlite, rlang, tools, methods

System Requirements

URL

Suggests affy

Linking To

Enhances

Imports Me

Suggests Me Hiiragi2013, bapred

Links To Me

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) ArrayExpress_1.66.0.zip

macOS Binary (x86_64) ArrayExpress_1.66.0.tgz

macOS Binary (arm64) ArrayExpress_1.66.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ArrayExpress

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayExpress

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