ACE

This package is for version 3.20 of Bioconductor; for the stable, up-to-date release version, see ACE.

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

Bioconductor version: 3.20

Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.

Author: Jos B Poell

Maintainer: Jos B Poell <j.poell at amsterdamumc.nl>

Citation (from within R, enter citation("ACE")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ACE")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ACE")

ACE vignette HTML R Script

Reference Manual PDF

NEWS Text

Version 1.24.0

In Bioconductor since BioC 3.8 (R-3.5) (6.5 years)

License GPL-2

Depends R (>= 3.4)

Imports Biobase, QDNAseq, ggplot2, grid, stats, utils, methods, grDevices, GenomicRanges

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Follow Installation instructions to use this package in your R session.

Source Package ACE_1.24.0.tar.gz

Windows Binary (x86_64) ACE_1.24.0.zip

macOS Binary (x86_64) ACE_1.24.0.tgz

macOS Binary (arm64) ACE_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ACE

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ACE

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