graph
This package is for version 3.2 of Bioconductor;
for the stable, up-to-date release version, see
graph.
graph: A package to handle graph data structures
Bioconductor version: 3.2
A package that implements some simple graph handling capabilities.
Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("graph")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graph")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("graph")
PDF
Attributes for Graph Objects
PDF
clusterGraph and distGraph
PDF
graphBAM and MultiGraph classes
Details
Version
1.48.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 11 years)
License
Artistic-2.0
Depends
R (>= 2.10), methods
Imports
stats, stats4, tools, utils,
BiocGenerics(>= 0.13.11)
LinkingTo
SystemRequirements
Depends On Me
apComplex,
biocGraph,
BioMVCClass,
BioNet,
CellNOptR,
clipper,
CNORfeeder,
ddgraph,
FEM,
flowClust,
flowMerge,
gaggle,
gaucho,
GeneNetworkBuilder,
GOFunction,
GOstats,
GraphAT,
GSEABase,
hypergraph,
keggorthology,
maigesPack,
MineICA,
NCIgraph,
NetSAM,
pathRender,
pkgDepTools,
ppiData,
RbcBook1,
RBGL,
RBioinf,
RCy3,
RCyjs,
RCytoscape,
RDAVIDWebService,
Rgraphviz,
ROntoTools,
RpsiXML,
SNAData,
SRAdb,
ToPASeq,
topGO,
vtpnet,
yeastExpData
Imports Me
AnalysisPageServer,
BiocCheck,
biocGraph,
biocViews,
CAMERA,
Category,
categoryCompare,
ChIPpeakAnno,
DEGraph,
EnrichmentBrowser,
FEM,
flowCore,
flowUtils,
flowWorkspace,
gage,
GeneNetworkBuilder,
GOFunction,
GOSim,
GOstats,
GraphAT,
graphite,
gwascat,
HTSanalyzeR,
hyperdraw,
KEGGgraph,
keggorthology,
keggorthology,
mirIntegrator,
mvGST,
NCIgraph,
nem,
netresponse,
OncoSimulR,
openCyto,
OrganismDbi,
pathview,
PCpheno,
pkgDepTools,
ppiStats,
qpgraph,
RamiGO,
RchyOptimyx,
rsbml,
Rtreemix,
SplicingGraphs,
Streamer,
topGO,
VariantFiltering
Suggests Me
AnnotationDbi,
BiocCaseStudies,
Category,
DEGraph,
EBcoexpress,
ecolitk,
GeneAnswers,
mmnet,
MmPalateMiRNA,
netbenchmark,
NetPathMiner,
rBiopaxParser,
rTRM,
SPIA,
VariantTools
Package Archives
Follow
Installation instructions to use this
package in your R session.