To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

In most cases, you don't need to download the package archive at all.

RCytoscape

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see RCytoscape.

Display and manipulate graphs in Cytoscape

Bioconductor version: 3.2

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCytoscape")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("RCytoscape")
PDF RCytoscape Overview
PDF Reference Manual
Text README
Text NEWS

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.20.1
In Bioconductor since BioC 2.7 (R-2.12) (5.5 years)
License GPL-2
Depends R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4)
Imports methods, XMLRPC, BiocGenerics
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL http://rcytoscape.systemsbiology.net
Depends On Me
Imports Me categoryCompare, NCIgraph, RamiGO
Suggests Me clipper, GeneNetworkBuilder, graphite, mmnet, NetPathMiner
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RCytoscape_1.20.1.tar.gz
Windows Binary RCytoscape_1.20.1.zip
Mac OS X 10.6 (Snow Leopard) RCytoscape_1.20.0.tgz
Mac OS X 10.9 (Mavericks) RCytoscape_1.20.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RCytoscape/tree/release-3.2
Package Short Url http://bioconductor.org/packages/RCytoscape/
Package Downloads Report Download Stats

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