To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

In most cases, you don't need to download the package archive at all.

ComplexHeatmap

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.

Making Complex Heatmaps

Bioconductor version: 3.2

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("ComplexHeatmap")
HTML 1. Introduction to ComplexHeatmap package
HTML 2. Making a single heatmap
HTML 3. Making a list of Heatmaps
HTML 4. Heatmap Annotations
HTML 5. Heatmap and Annotation Legends
HTML 6. Heatmap Decoration
HTML 7. Interactive with Heatmaps
HTML 8. OncoPrint
HTML 9. More Examples
PDF Reference Manual
Text NEWS

Details

biocViews Sequencing, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL (>= 2)
Depends R (>= 3.1.2), grid, graphics, stats, grDevices
Imports methods, circlize (>= 0.3.1), GetoptLong, colorspace, RColorBrewer, dendextend (>= 1.0.1), GlobalOptions (>= 0.0.6)
LinkingTo
Suggests testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve
SystemRequirements
Enhances
URL https://github.com/jokergoo/ComplexHeatmap
Depends On Me EnrichedHeatmap
Imports Me EnrichmentBrowser
Suggests Me HilbertCurve
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ComplexHeatmap_1.6.0.tar.gz
Windows Binary ComplexHeatmap_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) ComplexHeatmap_1.6.0.tgz
Mac OS X 10.9 (Mavericks) ComplexHeatmap_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ComplexHeatmap/tree/release-3.2
Package Short Url http://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report Download Stats

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