GOpro

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see GOpro.

Find the most characteristic gene ontology terms for groups of human genes

Bioconductor version: 3.19

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Author: Lidia Chrabaszcz

Maintainer: Lidia Chrabaszcz <chrabaszcz.lidia at gmail.com>

Citation (from within R, enter citation("GOpro")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GOpro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOpro")

GOpro: Determine groups of genes and find their characteristic GO term HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, MultipleComparison, Software

Version 1.30.0

In Bioconductor since BioC 3.4 (R-3.3) (8 years)

License GPL-3

Depends R (>= 3.5.0)

Imports AnnotationDbi, dendextend, doParallel, foreach, parallel, org.Hs.eg.db, GO.db, Rcpp, stats, graphics, MultiAssayExperiment, IRanges, S4Vectors

System Requirements

URL https://github.com/mi2-warsaw/GOpro

Bug Reports https://github.com/mi2-warsaw/GOpro/issues

Suggests knitr, rmarkdown, RTCGA.PANCAN12, BiocStyle, testthat

Linking To Rcpp, BH

Enhances

Depends On Me

Imports Me

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Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GOpro_1.30.0.tar.gz

Windows Binary (x86_64) GOpro_1.30.0.zip (64-bit only)

macOS Binary (x86_64) GOpro_1.30.0.tgz

macOS Binary (arm64) GOpro_1.30.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GOpro

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOpro

Bioc Package Browser https://code.bioconductor.org/browse/GOpro/

Package Short Url https://bioconductor.org/packages/GOpro/

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