BEARscc

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see BEARscc.

BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)

Bioconductor version: 3.19

BEARscc is a noise estimation and injection tool that is designed to assess putative single-cell RNA-seq clusters in the context of experimental noise estimated by ERCC spike-in controls.

Author: David T. Severson <david_severson at hms.harvard.edu>

Maintainer: Benjamin Schuster-Boeckler <benjamin.schuster-boeckler at ludwig.ox.ac.uk>

Citation (from within R, enter citation("BEARscc")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BEARscc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEARscc")

Vignette Title PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, ImmunoOncology, SingleCell, Software, Transcriptomics

Version 1.24.0

In Bioconductor since BioC 3.7 (R-3.5) (6.5 years)

License GPL-3

Depends R (>= 3.5.0)

Imports ggplot2, SingleCellExperiment, data.table, stats, utils, graphics, compiler

System Requirements

URL

Suggests testthat, cowplot, knitr, rmarkdown, BiocStyle, NMF

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BEARscc_1.24.0.tar.gz

Windows Binary (x86_64) BEARscc_1.24.0.zip (64-bit only)

macOS Binary (x86_64) BEARscc_1.24.0.tgz

macOS Binary (arm64) BEARscc_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BEARscc

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BEARscc

Bioc Package Browser https://code.bioconductor.org/browse/BEARscc/

Package Short Url https://bioconductor.org/packages/BEARscc/

Package Downloads Report Download Stats