ASpli

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ASpli.

Analysis of Alternative Splicing Using RNA-Seq

Bioconductor version: 3.19

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Ariel Chernomoretz <algo107 at gmail.com>

Citation (from within R, enter citation("ASpli")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")

ASpli PDF R Script

Reference Manual PDF

NEWS Text

Version 2.14.0

In Bioconductor since BioC 3.4 (R-3.3) (8 years)

License GPL

Depends methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi

System Requirements

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Depends On Me

Imports Me saseR

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Follow Installation instructions to use this package in your R session.

Source Package ASpli_2.14.0.tar.gz

Windows Binary (x86_64) ASpli_2.14.0.zip

macOS Binary (x86_64) ASpli_2.14.0.tgz

macOS Binary (arm64) ASpli_2.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ASpli

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASpli

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