seqCNA.annot

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see seqCNA.annot.

Annotation for the copy number analysis of deep sequencing cancer data with seqCNA

DOI: 10.18129/B9.bioc.seqCNA.annot

Bioconductor version: 3.17

Provides annotation on GC content, mappability and genomic features for various genomes

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Citation (from within R, enter citation("seqCNA.annot")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("seqCNA.annot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CopyNumberVariationData, ExperimentData, Genome

Version 1.36.0

License GPL-3

Depends R (>= 2.10)

Imports

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me seqCNA

Imports Me

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqCNA.annot_1.36.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/seqCNA.annot

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqCNA.annot

Package Short Url https://bioconductor.org/packages/seqCNA.annot/

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