SISPA
This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SISPA.
SISPA: Method for Sample Integrated Set Profile Analysis
Bioconductor version: 3.17
Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.
Author: Bhakti Dwivedi and Jeanne Kowalski
Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>
Citation (from within R, enter
citation("SISPA")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SISPA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SISPA") Reference Manual
PDF
NEWS
Text
Details
Version
1.30.0
In Bioconductor since
BioC 3.2 (R-3.2) (8.5 years)
License
GPL-2
Depends
R (>= 3.5), genefilter, GSVA, changepoint
Imports
data.table, plyr, ggplot2
System Requirements
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Suggests
knitr
Linking To
Enhances
Depends On Me
Imports Me
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Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
SISPA_1.30.0.tar.gz
Windows Binary
SISPA_1.30.0.zip (64-bit only)
macOS Binary (x86_64)
SISPA_1.30.0.tgz
macOS Binary (arm64)
SISPA_1.30.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/SISPA
Bioc Package Browser
https://code.bioconductor.org/browse/SISPA/
Package Short Url
https://bioconductor.org/packages/SISPA/
Package Downloads Report
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Old Source Packages for BioC 3.17
Source Archive