EGSEA123

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see EGSEA123.

Easy and efficient ensemble gene set testing with EGSEA

Bioconductor version: 3.16

R package that supports the workflow article `Easy and efficient ensemble gene set testing with EGSEA', Alhamdoosh et al. (2017), F1000Research, 6:2010.

Author: Monther Alhamdoosh, Charity Law, Luyi Tian, Julie Sheridan, Milica Ng and Matthew Ritchie

Maintainer: Matthew Ritchie <mritchie at wehi.edu.au>

Citation (from within R, enter citation("EGSEA123")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("EGSEA123")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EGSEA123")

Easy and efficient ensemble gene set testing with EGSEA HTML R Script

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpressionWorkflow, ImmunoOncologyWorkflow, Workflow

Version 1.22.0

License Artistic-2.0

Depends R (>= 3.4.0), EGSEA(>= 1.5.2), limma(>= 3.49.2), edgeR, illuminaio

Imports

System Requirements

URL https://f1000research.com/articles/6-2010

Suggests knitr, rmarkdown, BiocStyle

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EGSEA123_1.22.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/EGSEA123

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EGSEA123

Package Short Url https://bioconductor.org/packages/EGSEA123/

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