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seqbias
This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see seqbias.
Estimation of per-position bias in high-throughput sequencing data
Bioconductor version: 3.16
This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.
Author: Daniel Jones <djones3 at fredhutch.org>
Maintainer: Daniel Jones <djones3 at fredhutch.org>
citation("seqbias")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("seqbias")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqbias")
Details
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Follow Installation instructions to use this package in your R session.