ReQON

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ReQON.

Recalibrating Quality Of Nucleotides

Bioconductor version: 3.16

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Citation (from within R, enter citation("ReQON")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ReQON")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

ReQON Tutorial PDF R Script

Reference Manual PDF

NEWS Text

Version 1.44.0

In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)

License GPL-2

Depends R (>= 3.0.2), Rsamtools, seqbias

Imports rJava, graphics, stats, utils, grDevices

System Requirements Java version>= 1.6

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Follow Installation instructions to use this package in your R session.

Source Package ReQON_1.44.0.tar.gz

Windows Binary ReQON_1.44.0.zip

macOS Binary (x86_64) ReQON_1.44.0.tgz

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/ReQON

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReQON

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Old Source Packages for BioC 3.16 Source Archive