savR

This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see savR.

Parse and analyze Illumina SAV files

DOI: 10.18129/B9.bioc.savR

Bioconductor version: 3.16

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Citation (from within R, enter citation("savR")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("savR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")

Using savR PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Sequencing, Software

Version 1.36.0

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License AGPL-3

Depends ggplot2

Imports methods, reshape2, scales, gridExtra, XML

System Requirements

URL https://github.com/bcalder/savR

Bug Reports https://github.com/bcalder/savR/issues

Suggests Cairo, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package savR_1.36.0.tar.gz

Windows Binary savR_1.36.0.zip

macOS Binary (x86_64) savR_1.36.0.tgz

macOS Binary (arm64) savR_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/savR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/savR

Bioc Package Browser https://code.bioconductor.org/browse/savR/

Package Short Url https://bioconductor.org/packages/savR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.16 Source Archive