multiMiR

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see multiMiR.

Integration of multiple microRNA-target databases with their disease and drug associations

Bioconductor version: 3.16

A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

Author: Yuanbin Ru [aut], Matt Mulvahill [cre, aut], Spencer Mahaffey [aut], Katerina Kechris [aut, cph, ths]

Maintainer: Matt Mulvahill <matt.mulvahill at gmail.com>

Citation (from within R, enter citation("multiMiR")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("multiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiMiR")

The multiMiR user's guide HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData

Version 1.20.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License MIT + file LICENSE

Depends R (>= 3.4)

Imports stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 1.2), methods, BiocGenerics, AnnotationDbi, dplyr

System Requirements

URL https://github.com/KechrisLab/multiMiR

Bug Reports https://github.com/KechrisLab/multiMiR/issues

Suggests BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2)

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package multiMiR_1.20.0.tar.gz

Windows Binary multiMiR_1.20.0.zip

macOS Binary (x86_64) multiMiR_1.20.0.tgz

macOS Binary (arm64) multiMiR_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/multiMiR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiMiR

Bioc Package Browser https://code.bioconductor.org/browse/multiMiR/

Package Short Url https://bioconductor.org/packages/multiMiR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.16 Source Archive