groHMM

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see groHMM.

GRO-seq Analysis Pipeline

Bioconductor version: 3.16

A pipeline for the analysis of GRO-seq data.

Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus

Maintainer: Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>

Citation (from within R, enter citation("groHMM")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("groHMM")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("groHMM")

groHMM tutorial PDF R Script

Reference Manual PDF

NEWS Text

biocViews Sequencing, Software

Version 1.32.0

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License GPL-3

Depends R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomeInfoDb, GenomicRanges(>= 1.31.8), GenomicAlignments(>= 1.15.6), rtracklayer(>= 1.39.7)

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Follow Installation instructions to use this package in your R session.

Source Package groHMM_1.32.0.tar.gz

Windows Binary groHMM_1.32.0.zip

macOS Binary (x86_64) groHMM_1.32.0.tgz

macOS Binary (arm64) groHMM_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/groHMM

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/groHMM

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Old Source Packages for BioC 3.16 Source Archive