cghMCR

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see cghMCR.

Find chromosome regions showing common gains/losses

Bioconductor version: 3.16

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("cghMCR")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("cghMCR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

cghMCR findMCR PDF R Script

Reference Manual PDF

Version 1.56.0

In Bioconductor since BioC 1.8 (R-2.3) (18 years)

License LGPL

Depends methods, DNAcopy, CNTools, limma

Imports BiocGenerics(>= 0.1.6), stats4

System Requirements

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Follow Installation instructions to use this package in your R session.

Source Package cghMCR_1.56.0.tar.gz

Windows Binary cghMCR_1.56.0.zip

macOS Binary (x86_64) cghMCR_1.56.0.tgz

macOS Binary (arm64) cghMCR_1.56.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/cghMCR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cghMCR

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Old Source Packages for BioC 3.16 Source Archive