Wrench

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Wrench.

Wrench normalization for sparse count data

Bioconductor version: 3.16

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Citation (from within R, enter citation("Wrench")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Wrench")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Wrench")

Wrench HTML R Script

Reference Manual PDF

Version 1.16.0

In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)

License Artistic-2.0

Depends R (>= 3.5.0)

Imports limma, matrixStats, locfit, stats, graphics

System Requirements

Suggests knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR

Linking To

Enhances

Depends On Me

Imports Me metagenomeSeq

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package Wrench_1.16.0.tar.gz

Windows Binary Wrench_1.16.0.zip

macOS Binary (x86_64) Wrench_1.16.0.tgz

macOS Binary (arm64) Wrench_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Wrench

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Wrench

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Old Source Packages for BioC 3.16 Source Archive