SingleCellSignalR

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see SingleCellSignalR.

Cell Signalling Using Single Cell RNAseq Data Analysis

DOI: 10.18129/B9.bioc.SingleCellSignalR

Bioconductor version: 3.16

Allows single cell RNA seq data analysis, clustering, creates internal network and infers cell-cell interactions.

Author: Simon Cabello-Aguilar [aut], Jacques Colinge [cre, aut]

Maintainer: Jacques Colinge <jacques.colinge at inserm.fr>

Citation (from within R, enter citation("SingleCellSignalR")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("SingleCellSignalR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SingleCellSignalR")

my-vignette HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Clustering, Network, RNASeq, SingleCell, Software

Version 1.10.0

In Bioconductor since BioC 3.11 (R-4.0) (4 years)

License GPL-3

Depends R (>= 4.0)

Imports BiocManager, circlize, limma, igraph, gplots, grDevices, edgeR, SIMLR, data.table, pheatmap, stats, Rtsne, graphics, stringr, foreach, multtest, scran, utils

System Requirements

URL

Suggests knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me tidySingleCellExperiment

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SingleCellSignalR_1.10.0.tar.gz

Windows Binary SingleCellSignalR_1.10.0.zip

macOS Binary (x86_64) SingleCellSignalR_1.10.0.tgz

macOS Binary (arm64) SingleCellSignalR_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SingleCellSignalR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SingleCellSignalR

Bioc Package Browser https://code.bioconductor.org/browse/SingleCellSignalR/

Package Short Url https://bioconductor.org/packages/SingleCellSignalR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.16 Source Archive