ComplexHeatmap

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.

Make Complex Heatmaps

Bioconductor version: 3.16

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu [aut, cre]

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

complex_heatmap.html HTML

Most probably asked questions HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Sequencing, Software, Visualization

Version 2.14.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License MIT + file LICENSE

Depends R (>= 3.5.0), methods, grid, graphics, stats, grDevices

Imports circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools

System Requirements

URL https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/

Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo

Linking To

Enhances

Depends On Me AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, recoup