ASURAT
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ASURAT.
Functional annotation-driven unsupervised clustering for single-cell data
Bioconductor version: 3.16
ASURAT is a software for single-cell data analysis. Using ASURAT, one can simultaneously perform unsupervised clustering and biological interpretation in terms of cell type, disease, biological process, and signaling pathway activity. Inputting a single-cell RNA-seq data and knowledge-based databases, such as Cell Ontology, Gene Ontology, KEGG, etc., ASURAT transforms gene expression tables into original multivariate tables, termed sign-by-sample matrices (SSMs).
Author: Keita Iida [aut, cre] , Johannes Nicolaus Wibisana [ctb]
Maintainer: Keita Iida <kiida at protein.osaka-u.ac.jp>
citation("ASURAT")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASURAT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASURAT")
Details
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Follow Installation instructions to use this package in your R session.