CSSP

This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CSSP.

ChIP-Seq Statistical Power

DOI: 10.18129/B9.bioc.CSSP

Bioconductor version: 3.16

Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.

Author: Chandler Zuo, Sunduz Keles

Maintainer: Chandler Zuo<zuo at stat.wisc.edu>

Citation (from within R, enter citation("CSSP")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CSSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CSSP")

cssp.pdf PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Bayesian, ChIPSeq, QualityControl, Sequencing, Software

Version 1.36.0

In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)

License GPL-2

Depends

Imports methods, splines, stats, utils

System Requirements

URL

Suggests testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CSSP_1.36.0.tar.gz

Windows Binary CSSP_1.36.0.zip (64-bit only)

macOS Binary (x86_64) CSSP_1.36.0.tgz

macOS Binary (arm64) CSSP_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CSSP

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CSSP

Bioc Package Browser https://code.bioconductor.org/browse/CSSP/

Package Short Url https://bioconductor.org/packages/CSSP/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.16 Source Archive