CAnD
This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CAnD.
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Bioconductor version: 3.14
Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.
Author: Caitlin McHugh, Timothy Thornton
Maintainer: Caitlin McHugh <mchughc at uw.edu>
citation("CAnD")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CAnD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAnD")
Details
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Follow Installation instructions to use this package in your R session.