silva128.1MgDb

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see silva128.1MgDb.

SILVA SSR rRNA release 128.1 Annotation Data

DOI: 10.18129/B9.bioc.silva128.1MgDb

Bioconductor version: 3.12

Metagenome annotation package with for the SILVA SSR rRNA database release 128.1, Bacterial and Archeal sequences. Contains a MgDb-class object, defined in the metagenomeFeatures package.

Author: Nathan D. Olson <nolson at umias.umd.edu>, Joseph Nathaniel Paulson, Hector Corrada-Bravo

Maintainer: Nathan D. Olson <nolson at umiacs.umd.edu>

Citation (from within R, enter citation("silva128.1MgDb")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("silva128.1MgDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

README Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, Metagenomics, Microbiome, Sequencing

Version 1.00.0

License Artistic-2.0

Depends R (>= 3.5)

Imports metagenomeFeatures(>= 1.99.9)

System Requirements

URL https://github.com/HCBravoLab/silva128.1MgDb

Bug Reports https://github.com/HCBravoLab/silva128.1MgDb/issues

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package silva128.1MgDb_1.00.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Package Short Url https://bioconductor.org/packages/silva128.1MgDb/

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