pcot2
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pcot2.
Principal Coordinates and Hotelling's T-Square method
Bioconductor version: 3.12
PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.
Author: Sarah Song, Mik Black
Maintainer: Sarah Song <qson003 at stat.auckland.ac.nz>
citation("pcot2")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pcot2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pcot2")
Details
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Follow Installation instructions to use this package in your R session.