mdgsa

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mdgsa.

Multi Dimensional Gene Set Analysis.

DOI: 10.18129/B9.bioc.mdgsa

Bioconductor version: 3.12

Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.

Author: David Montaner <dmontaner at cipf.es>

Maintainer: David Montaner <dmontaner at cipf.es>

Citation (from within R, enter citation("mdgsa")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("mdgsa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mdgsa")

mdgsa_vignette PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software

Version 1.22.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License GPL

Depends R (>= 2.14)

Imports AnnotationDbi, DBI, GO.db, KEGG.db, cluster, Matrix

System Requirements

URL https://github.com/dmontaner/mdgsa http://www.dmontaner.com

Suggests BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit, BiocGenerics

Linking To

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Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mdgsa_1.22.0.tar.gz

Windows Binary mdgsa_1.22.0.zip

macOS 10.13 (High Sierra) mdgsa_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/mdgsa

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mdgsa

Bioc Package Browser https://code.bioconductor.org/browse/mdgsa/

Package Short Url https://bioconductor.org/packages/mdgsa/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.12 Source Archive