affyQCReport

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyQCReport.

QC Report Generation for affyBatch objects

DOI: 10.18129/B9.bioc.affyQCReport

Bioconductor version: 3.12

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Citation (from within R, enter citation("affyQCReport")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("affyQCReport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyQCReport")

affyQCReport: Methods for Generating Affymetrix QC Reports PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, OneChannel, QualityControl, Software

Version 1.68.0

In Bioconductor since BioC 1.7 (R-2.2) (18.5 years)

License LGPL (>= 2)

Depends Biobase(>= 1.13.16), affy, lattice

Imports affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable

System Requirements

URL

Suggests tkWidgets(>= 1.5.23), affydata(>= 1.4.1)

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me BiocCaseStudies

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affyQCReport_1.68.0.tar.gz

Windows Binary affyQCReport_1.68.0.zip

macOS 10.13 (High Sierra) affyQCReport_1.68.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/affyQCReport

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyQCReport

Bioc Package Browser https://code.bioconductor.org/browse/affyQCReport/

Package Short Url https://bioconductor.org/packages/affyQCReport/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.12 Source Archive