HCABrowser

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HCABrowser.

Browse the Human Cell Atlas data portal

DOI: 10.18129/B9.bioc.HCABrowser

Bioconductor version: 3.12

Search, browse, reference, and download resources from the Human Cell Atlas data portal. Development of this package is supported through funds from the Chan / Zuckerberg initiative.

Author: Daniel Van Twisk [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("HCABrowser")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("HCABrowser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HCABrowser")

HCABrowser HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Sequencing, SingleCell, Software

Version 1.6.0

In Bioconductor since BioC 3.9 (R-3.6) (5 years)

License Artistic-2.0

Depends R (>= 3.6.0), dplyr, AnVIL

Imports BiocFileCache, googleAuthR, httr, methods, readr, rlang, utils

System Requirements

URL https://github.com/Bioconductor/HCABrowser

Bug Reports https://github.com/Bioconductor/HCABrowser/issues

Suggests BiocStyle, knitr, rmarkdown, stringr, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me HCAMatrixBrowser

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HCABrowser_1.6.0.tar.gz

Windows Binary HCABrowser_1.6.0.zip

macOS 10.13 (High Sierra) HCABrowser_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/HCABrowser

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HCABrowser

Bioc Package Browser https://code.bioconductor.org/browse/HCABrowser/

Package Short Url https://bioconductor.org/packages/HCABrowser/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.12 Source Archive