waveTiling

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see waveTiling.

Wavelet-Based Models for Tiling Array Transcriptome Analysis

DOI: 10.18129/B9.bioc.waveTiling

Bioconductor version: 3.10

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>

Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>

Citation (from within R, enter citation("waveTiling")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("waveTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("waveTiling")

The waveTiling package PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, TimeCourse

Version 1.28.0

In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)

License GPL (>=2)

Depends oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs

Imports methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges

System Requirements

URL https://r-forge.r-project.org/projects/wavetiling/

Suggests BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package waveTiling_1.28.0.tar.gz

Windows Binary waveTiling_1.28.0.zip

Mac OS X 10.11 (El Capitan) waveTiling_1.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/waveTiling

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/waveTiling

Bioc Package Browser https://code.bioconductor.org/browse/waveTiling/

Package Short Url https://bioconductor.org/packages/waveTiling/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive