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triform
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see triform.
Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data
Bioconductor version: 3.10
The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.
Author: Karl Kornacker Developer [aut], Tony Handstad Developer [aut, cre]
Maintainer: Thomas Carroll <tc.infomatics at gmail.com>
citation("triform")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("triform")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("triform")
Details
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Follow Installation instructions to use this package in your R session.