flowDensity

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see flowDensity.

Sequential Flow Cytometry Data Gating

Bioconductor version: 3.10

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Citation (from within R, enter citation("flowDensity")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")

Introduction to automated gating HTML R Script

Reference Manual PDF

README Text

NEWS Text

Version 1.20.0

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License Artistic-2.0

Depends

Imports flowCore, graphics, flowViz(>= 1.46.1), car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.33.1), methods, stats, grDevices

System Requirements xml2, GNU make, C++11

URL

Suggests knitr

Linking To

Enhances

Depends On Me

Imports Me ddPCRclust

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary flowDensity_1.20.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) flowDensity_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowDensity

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowDensity

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Old Source Packages for BioC 3.10 Source Archive