anamiR

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see anamiR.

An integrated analysis package of miRNA and mRNA expression data

DOI: 10.18129/B9.bioc.anamiR

Bioconductor version: 3.10

This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.

Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]

Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>

Citation (from within R, enter citation("anamiR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("anamiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("anamiR")

Introduction to anamiR HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA

Version 1.13.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License GPL-2

Depends R (>= 3.5)

Imports stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots, gage, S4Vectors

System Requirements

URL https://github.com/AllenTiTaiWang/anamiR

Bug Reports https://github.com/AllenTiTaiWang/anamiR/issues

Suggests knitr, rmarkdown, data.table

Linking To

Enhances

Depends On Me

Imports Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package anamiR_1.13.0.tar.gz

Windows Binary anamiR_1.13.0.zip

Mac OS X 10.11 (El Capitan) anamiR_1.13.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/anamiR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/anamiR

Bioc Package Browser https://code.bioconductor.org/browse/anamiR/

Package Short Url https://bioconductor.org/packages/anamiR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive