SANTA
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.
Spatial Analysis of Network Associations
Bioconductor version: 3.10
This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).
Author: Alex J. Cornish and Florian Markowetz
Maintainer: Alex J. Cornish <a.cornish12 at imperial.ac.uk>
citation("SANTA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SANTA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SANTA")
Details
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Follow Installation instructions to use this package in your R session.