MCRestimate

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MCRestimate.

Misclassification error estimation with cross-validation

DOI: 10.18129/B9.bioc.MCRestimate

Bioconductor version: 3.10

This package includes a function for combining preprocessing and classification methods to calculate misclassification errors

Author: Marc Johannes, Markus Ruschhaupt, Holger Froehlich, Ulrich Mansmann, Andreas Buness, Patrick Warnat, Wolfgang Huber, Axel Benner, Tim Beissbarth

Maintainer: Marc Johannes <m.johannes at dkfz.de>

Citation (from within R, enter citation("MCRestimate")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MCRestimate")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MCRestimate")

HOW TO use MCRestimate PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Software

Version 2.42.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)

License GPL (>= 2)

Depends R (>= 2.7.2), golubEsets(>= 1.4.6)

Imports e1071 (>= 1.5-12), pamr (>= 1.22), randomForest (>= 3.9-6), RColorBrewer (>= 0.1-3), Biobase(>= 2.5.5), graphics, grDevices, stats, utils

System Requirements

URL

Suggests xtable (>= 1.2-1), ROC(>= 1.8.0), genefilter(>= 1.12.0), gpls(>= 1.6.0)

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MCRestimate_2.42.0.tar.gz

Windows Binary MCRestimate_2.42.0.zip

Mac OS X 10.11 (El Capitan) MCRestimate_2.42.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MCRestimate

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MCRestimate

Bioc Package Browser https://code.bioconductor.org/browse/MCRestimate/

Package Short Url https://bioconductor.org/packages/MCRestimate/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive