IPPD
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see IPPD.
Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching
Bioconductor version: 3.10
The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.
Author: Martin Slawski <ms at cs.uni-saarland.de>, Rene Hussong <rene.hussong at uni.lu>, Andreas Hildebrandt <andreas.hildebrandt at uni-mainz.de>, Matthias Hein <hein at cs.uni-saarland.de>
Maintainer: Martin Slawski <ms at cs.uni-saarland.de>
citation("IPPD")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IPPD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IPPD")
Details
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Follow Installation instructions to use this package in your R session.