Genominator

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Genominator.

Analyze, manage and store genomic data

DOI: 10.18129/B9.bioc.Genominator

Bioconductor version: 3.10

Tools for storing, accessing, analyzing and visualizing genomic data.

Author: James Bullard, Kasper Daniel Hansen

Maintainer: James Bullard <bullard at stat.berkeley.edu>

Citation (from within R, enter citation("Genominator")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Genominator")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Genominator")

Plotting with Genominator PDF R Script

The Genominator User Guide PDF R Script

Working with the ShortRead Package PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.40.0

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License Artistic-2.0

Depends R (>= 2.10), methods, RSQLite, DBI (>= 0.2-5), BiocGenerics(>= 0.1.0), IRanges(>= 2.5.27), GenomeGraphs

Imports graphics, stats, utils

System Requirements

URL

Suggests biomaRt, ShortRead, yeastRNASeq

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Genominator_1.40.0.tar.gz

Windows Binary Genominator_1.40.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) Genominator_1.40.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Genominator

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Genominator

Bioc Package Browser https://code.bioconductor.org/browse/Genominator/

Package Short Url https://bioconductor.org/packages/Genominator/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive