To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

In most cases, you don't need to download the package archive at all.

AnnotationHub

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see AnnotationHub.

Client to access AnnotationHub resources

Bioconductor version: 3.1

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Author: Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHub")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationHub")
HTML R Script AnnotationHub: Access the AnnotationHub Web Service
HTML R Script AnnotationHub: How to write recipes for new resources for the AnnotationHub
PDF Reference Manual
Text NEWS

Details

biocViews Software
Version 2.0.4
In Bioconductor since BioC 2.12 (R-3.0) (3 years)
License Artistic-2.0
Depends
LinkingTo
SystemRequirements
Enhances
URL
Depends On Me RefNet
Imports Me grasp2db, pwOmics
Suggests Me GenomicRanges, Pbase

Package Archives

Follow Installation instructions to use this package in your R session.

Windows Binary AnnotationHub_2.0.4.zip
Mac OS X 10.6 (Snow Leopard) AnnotationHub_2.0.4.tgz
Package Downloads Report Download Stats

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