To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

In most cases, you don't need to download the package archive at all.

AnnotationForge

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see AnnotationForge.

Code for Building Annotation Database Packages

Bioconductor version: 3.1

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationForge")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("AnnotationForge")
PDF R Script AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF R Script Creating probe packages
PDF R Script SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML R Script Making New Organism Packages
PDF Reference Manual
Text NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.10.1
In Bioconductor since BioC 2.11 (R-2.15) (3.5 years)
License Artistic-2.0
Depends R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.1.13), Biobase(>= 1.17.0), AnnotationDbi(>= 1.19.15), org.Hs.eg.db
Imports methods, utils, DBI, RSQLite, BiocGenerics, S4Vectors, Biobase
LinkingTo
Suggests DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db, human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me GGHumanMethCancerPanelv1.db, GOstats
Suggests Me AnnotationDbi, AnnotationHub
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AnnotationForge_1.10.1.tar.gz
Windows Binary AnnotationForge_1.10.1.zip
Mac OS X 10.6 (Snow Leopard) AnnotationForge_1.10.1.tgz
Mac OS X 10.9 (Mavericks) AnnotationForge_1.10.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AnnotationForge/tree/release-3.1
Package Short Url http://bioconductor.org/packages/AnnotationForge/
Package Downloads Report Download Stats

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