To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SomaticSignatures")

In most cases, you don't need to download the package archive at all.

SomaticSignatures

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see SomaticSignatures.

Somatic Signatures

Bioconductor version: 3.0

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).

Author: Julian Gehring (EMBL Heidelberg)

Maintainer: Julian Gehring <julian.gehring at embl.de>

Citation (from within R, enter citation("SomaticSignatures")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SomaticSignatures")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("SomaticSignatures")
HTML R Script SomaticSignatures
PDF Reference Manual
Text NEWS

Details

biocViews Clustering, GenomicVariation, Sequencing, Software, SomaticMutation, StatisticalMethod, Visualization
Version 2.2.3
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License GPL-3
Depends R (>= 3.0.2), VariantAnnotation, GenomicRanges
Imports S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio, reshape2, NMF, pcaMethods, Biobase, methods, proxy
LinkingTo
Suggests testthat, knitr, parallel, BSgenome.Hsapiens.UCSC.hg19, SomaticCancerAlterations, COSMIC.67, ggdendro, fastICA
SystemRequirements
Enhances
URL http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html https://github.com/julian-gehring/SomaticSignatures
Depends On Me
Imports Me Rariant
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SomaticSignatures_2.2.3.tar.gz
Windows Binary SomaticSignatures_2.2.3.zip
Mac OS X 10.6 (Snow Leopard) SomaticSignatures_2.2.3.tgz
Mac OS X 10.9 (Mavericks) SomaticSignatures_2.2.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/SomaticSignatures/tree/release-3.0
Package Short Url http://bioconductor.org/packages/SomaticSignatures/
Package Downloads Report Download Stats

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