To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("M3D")

In most cases, you don't need to download the package archive at all.

M3D

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see M3D.

Identifies differentially methylated regions across testing groups.

Bioconductor version: 3.0

This package identifies statistically significantly differentially methylated regions of CpGs. It uses kernel methods (the Maximum Mean Discrepancy) to measure differences in methylation profiles, and relates these to inter-replicate changes, whilst accounting for variation in coverage profiles.

Author: Tom Mayo

Maintainer: Tom Mayo <t.mayo at ed.ac.uk>

Citation (from within R, enter citation("M3D")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("M3D")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3D")
PDF R Script An Introduction to the M$^3$D method
PDF Reference Manual
Text NEWS

Details

Version 1.1.4
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic License 2.0
Depends R (>= 3.0.0)
LinkingTo
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Enhances
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Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source M3D_1.1.4.tar.gz
Windows Binary M3D_1.1.4.zip
Mac OS X 10.6 (Snow Leopard) M3D_1.1.4.tgz
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