To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snapCGH")

In most cases, you don't need to download the package archive at all.

snapCGH

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see snapCGH.

Segmentation, normalisation and processing of aCGH data.

Bioconductor version: 2.10

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne

Maintainer: John Marioni <marioni at uchicago.edu>

Citation (from within R, enter citation("snapCGH")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snapCGH")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("snapCGH")
PDF Segmentation Overview
PDF Reference Manual

Details

biocViews CopyNumberVariants, Microarray, Preprocessing, Software, TwoChannel
Version 1.26.0
In Bioconductor since BioC 1.8 (R-2.3) (10 years)
License GPL
Depends limma, DNAcopy, methods
Imports aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me ADaCGH2
Imports Me
Suggests Me beadarraySNP
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source snapCGH_1.26.0.tar.gz
Windows Binary snapCGH_1.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/snapCGH/tree/release-2.10
Package Short Url http://bioconductor.org/packages/snapCGH/
Package Downloads Report Download Stats

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