To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("beadarraySNP")

In most cases, you don't need to download the package archive at all.

beadarraySNP

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see beadarraySNP.

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: 2.10

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("beadarraySNP")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("beadarraySNP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("beadarraySNP")
PDF beadarraySNP.pdf
PDF Reference Manual

Details

biocViews CopyNumberVariants, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.22.0
In Bioconductor since BioC 1.9 (R-2.4) (9.5 years)
License GPL-2
Depends methods, Biobase(>= 2.5.5), quantsmooth
Imports
LinkingTo
Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source beadarraySNP_1.22.0.tar.gz
Windows Binary beadarraySNP_1.22.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/beadarraySNP/tree/release-2.10
Package Short Url http://bioconductor.org/packages/beadarraySNP/
Package Downloads Report Download Stats

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