To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("marray")

In most cases, you don't need to download the package archive at all.

marray

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see marray.

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.10

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Citation (from within R, enter citation("marray")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("marray")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("marray")
PDF ExampleHTML.pdf
PDF marray Normalization
PDF marray Overview
PDF marrayClasses Overview
PDF marrayClasses Tutorial (short)
PDF marrayInput Introduction
PDF marrayPlots Overview
PDF widget1.pdf
PDF Reference Manual
Text LICENSE

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 1.34.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL
Depends R (>= 2.10.0), limma, methods
Imports
LinkingTo
Suggests tkWidgets
SystemRequirements
Enhances
URL http://www.maths.usyd.edu.au/u/jeany/
Depends On Me beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, nnNorm, OLIN, stepNorm, TurboNorm
Imports Me arrayQuality, nnNorm, OLIN, OLINgui, sigaR, stepNorm, timecourse
Suggests Me Agi4x44PreProcess, AgiMicroRna, DEGraph, Mfuzz
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source marray_1.34.0.tar.gz
Windows Binary marray_1.34.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/marray/tree/release-2.10
Package Short Url http://bioconductor.org/packages/marray/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

AltStyle によって変換されたページ (->オリジナル) /