To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TurboNorm")

In most cases, you don't need to download the package archive at all.

TurboNorm

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see TurboNorm.

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: 2.10

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <M.van_iterson.HG at lumc.nl>

Citation (from within R, enter citation("TurboNorm")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TurboNorm")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("TurboNorm")
PDF TurboNorm Overview
PDF Reference Manual
Text NEWS

Details

biocViews CpGIsland, DNAMethylation, Microarray, OneChannel, Preprocessing, Software, TwoChannel
Version 1.4.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License LGPL
Depends R (>= 2.12.0), convert, limma(>= 1.7.0), marray
Imports stats, grDevices, affy, lattice
LinkingTo
Suggests affydata, affy, lattice
SystemRequirements
Enhances
URL http://www.humgen.nl/MicroarrayAnalysisGroup.html
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source TurboNorm_1.4.0.tar.gz
Windows Binary TurboNorm_1.4.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/TurboNorm/tree/release-2.10
Package Short Url http://bioconductor.org/packages/TurboNorm/
Package Downloads Report Download Stats

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