To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefu")

In most cases, you don't need to download the package archive at all.

genefu

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see genefu.

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: 2.10

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>

Citation (from within R, enter citation("genefu")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genefu")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("genefu")
PDF genefu An Introduction (HowTo)
PDF Reference Manual
Text README

Details

biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Version 1.6.1
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends R (>= 2.10), survcomp, mclust
Imports amap
LinkingTo
Suggests GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable
SystemRequirements
Enhances
URL http://compbio.dfci.harvard.edu
Depends On Me
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genefu_1.6.1.tar.gz
Windows Binary genefu_1.6.1.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/genefu/tree/release-2.10
Package Short Url http://bioconductor.org/packages/genefu/
Package Downloads Report Download Stats

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